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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is … the primary author on this publication and drove the entire project, Visel explained. She continued working virtually … Wint said. “Fungi play an important role in the earth’s ecosystem,” said Salamov, one of Wint’s mentors and …
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Corals in Hot Water Get Help From Their Microbes
… As waters warm due to climate change, corals are in mortal peril. But corals comprise multiple organisms: a … a photosynthetic microalgae, and a little-characterized microbiome. When warm waters stress corals, it might be their microbes, including their photosynthetic partner, that help them take …
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MGM Workshop at Fisabio Summer School
… research, the health sciences and related fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the human microbiome. The workshop will train participants in …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, laboratory information tracking, and … BS in Electrical Engineering, University of New South Wales, …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was … 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and … DOE relevant cellulosic feedstocks. He provides scientific project management for the reference eukaryotic genomes …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… s ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have discovered flagella in an unexpected place: hot spring-dwelling bacteria from … echoes of others remain.  Until now,  Chloroflexota had not been known to produce flagella — propeller-like structures …
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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the … A reference genome for the sugarcane cultivar R570 has been  published in  Nature by an international consortium. With the genetic … of Experimental Botany (IEB) was supported by the ERDF project “Plants as a Tool for Sustainable Global …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — … published January 27, is about engineering plants and their microbiomes for more sustainable agriculture and was written … As such, JGI is involved in a broad variety of genomics projects that relate to energy and the environment.” she …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … advances. Over the last two decades, Stable Isotope Probing (SIP) has opened vast windows into specific activities … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Virus species names have been standardized; virus names remain unchanged
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … involved in capsid maturation. Recently reported in  Microbiome , researchers from the US Department of Energy … datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … it predicted many more likely hosts for viruses in human microbiome samples, reflecting factors such as the quality and number of datasets for human microbiome data. In other environments, such as terrestrial …
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