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Genome‐wide CRISPR‐Cas9 screen reveals a persistent null‐hyphal phenotype that maintains high carotenoid production in Yarrowia lipolytica
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Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi
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Genome-wide functional screens enable the prediction of high activity CRISPR-Cas9 and -Cas12a guides in Yarrowia lipolytica
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Benjamin Cole
… how plants coordinate their gene expression with light and temperature oscillations throughout the day. At the Joint … plant roots, focusing on genetic components required for effective colonization. In addition, Dr. Cole is … (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency … areas that require cleanup and long-term monitoring. The DOE has been similarly invested in environmental management, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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When “The Blob” Made It Hotter Under the Water
… climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … samples were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Fungus Fuels Tree Growth
… growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual … of particular interest to the U.S. Department of Energy (DOE). By better understanding how poplar responds to its … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms … postdoctoral researcher at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Approved Proposals
… pdf of accepted proposals from previous fiscal years for our Community Science Program (CSP) as well as the Facilities Integrating Collaborations for User Science (FICUS) program.  …
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Massie S. Ballon
S. Ballon is the Communications and Outreach Manager at the JGI. Prior to this role, she served as the primary storyteller and social media manager for the JGI. She produced both text-based and multimedia … from Wesleyan University, and a graduate certificate in science communication from UC Santa Cruz. She is one of the …
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