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Computationally Classifying Fungal Lifestyles
… of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes … fungal lifestyles of saprobes and pathogens based on the data provided. In this proof of concept test, the team … S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they also built a …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
Internship co-founder Axel Visel and UC Merced Quantitative Systems Biology professor Carolin Frank reflected on the … and a teaching assistant for the UC Merced Quantitative and Systems Biology department.   Jonelle Basso , a JGI research …
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NeLLi — Symposium on New Lineages of Life
… of Symposium Goals Metagenomic and single-cell sequence data have provided a means to access novel microbial … approaches to assign functional “read out” to sequence data. Moving from cataloging microbial diversity to …
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Crawling through time: Transition of snails to slugs dating back to the Paleozoic, based on mitochondrial phylogenomics
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JGI & KBase at PAG XXVII
… from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. … sequence information to BER-funded activities of plant systems that make use of these resources will present on …
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JGI Workshops at PAG
… sequence information to BER funded activities of plant systems. We will describe how to apply for a project with …
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Game On: High School Students Drive Everglades Metagenomics Study
… through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study and compare for the … tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what to pull out … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Matthew Kellom
… and using metagenomics to study these complex natural systems. Microbial communities living in hard-to-reach …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… of topics related to structural biology, single cell and systems biology, omics, and big data science, machine learning for experimental science, … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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User Advisory Committees
… effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… in their neighborhoods and nearby forests with the right tools to track infection. The parallel development of the … large-scale “citizen science” project to generate real-time data for modeling and predicting the spread of a plant … 500 people participated in SOD Blitz activity, and these data were subsequently used by three million others in the …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… director of Berkeley Lab’s Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s Microbial Systems group. The award ceremony was held January 19, 2021. …
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