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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … demonstrated the efficacy and potential of regulon identification by in vitro transcription-sequencing (RIViT-seq) to … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Transcription …
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Extracting the Secrets of Secondary Metabolites
… survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … Unlocking the power of secondary metabolites can be complicated because the BGCs that produce them cannot be activated … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) can then employ …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… as they came onsite. From data carpentry to science communications, their schedules were filled with trainings that … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … extremophile protists from a hypersaline alkaline lake in California. Sandra Hernandez Gonzalez : Out of this …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and … yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data life …
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Gotta Catch 'Em Gall
… Kasey Markel and Patrick Shih (UC Berkeley and the Joint BioEnergy Institute) are looking for …
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iPHoP: A Matchmaker for Phages and their Hosts
… With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic … a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, aimed to streamline a process …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … and poplar, a team led by Hui-Ling (Sunny) Liao of the University of Florida collected forest samples of poplar and … that lipids could act as a bridge of interkingdom communication between the plant and fungus. Discovering how …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory and used to identify the … ) conducted by the U.S. Department of Energy Joint Genome Institute (JGI) ( …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), has generated a … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Biodesign
… for bioenergy, nutrient cycling and bioproduct applications.  The team has three subgroups: Synthetic Biology Lab : a user science group dedicated to user project design, assembly, and quality control … automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables …
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Complete genome sequence of Olsenella uli type strain (VPI D76D-27CT)
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … a collaborative effort led by researchers at Cornell University and scientists at the Joint Genome Institute, a … As reported in the November 29, 2017 issue of Nature Communications , the team found that the fungus is highly dependent …
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