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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change impact on marine microbial … it in the deep ocean. With genomic samples collected before, during and after The Blob, researchers developed a … water about a third the size of the United States began forming in Alaska. Over the next two years it slowly spread, …
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Honey Bee Gut Microbiota Divvy Up Dinner
… in the next generation of flowering vegetation. In return for their services, bees eat plant nectar and pollen. Nectar … carries out its helpful metabolism: who’s responsible for what biochemical processes? Now, an international team … Bifidobacterium  are able to carry out this metabolic feat. For both clades, then, strains are variable in their …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. Tolkien’s “The Lord of the Rings,” the Hornburg fortress had withstood all attacks – until the Battle of … Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria resist foreign …
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Streamlining Regulon Identification in Bacteria
… regulation is critical to ensuring genes vital for growth and survival across various environments are … While characterizing sigma factors is the most straightforward application of the technology, in principle, … there is only one type of RNA polymerase responsible for each gene. These bacterial RNA polymerases are made up …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … the National Microbiome Data Collaborative’s EDGE platform. The Impact In order to gain more insights into Earth’s … that combines and builds on two standard techniques for identifying viruses and plasmids. Until now, most other …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a … that colonizes Brock and gives him super strength. For lichen, the partnership is more commonplace — though … research, many of the symbiosis’ details remain unclear. For the first time, a team has analyzed in parallel the …
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Filling in the Plant Tree of Life
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JGI Hosts GPU Hackathon in May
… in graphical processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by … JGI hackathon is particularly focused on developing bioinformatics applications instead of on simulation codes. “JGI … has a strong reputation in the community,” said JGI Chief Informatics Officer Kjiersten Fagnan of the upcoming event. …
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JGI Workshops at PAG
… hear from researchers who are applying genomic sequence information to BER funded activities of plant systems. We will describe how to apply for a project with the JGI Community Science Program and how …
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Ben Bowen
… projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, modeling, and data integration. Dr. … T., & Bowen, B. (2013). OpenMSI: a high-performance web-based platform for mass spectrometry imaging. Analytical …
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Learning to Look
… answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … through genetic engineering, inoviruses are used for several biotechnological applications, most notably, … with the Inoviridae. “What we’re really doing is looking for a particular gene found in all inoviruses, and then …
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Better Crops With a Pointillist Approach to Plant Genomics
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