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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of … repository of BGC sequence data from over 1.3 million publicly available bacterial and archaeal genome and contig … biosynthetic gene clusters and secondary metabolites information from isolate and metagenome data.   The SMC ( …
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Party in the Rhizosphere
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JGI@25: The Little Alga That Could
… 2007 the full genome was sequenced and published in the journal Science . At the time, the project was co-led by Daniel … of polycistronic genes within Chlamy, meaning that its RNA can produce up to four proteins, which has far-reaching … is that in eukaryotes, one protein is produced from one RNA,” Merchant said. Rory Craig, a former JGI intern now a …
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The More the Merrier: Making the Case for Plant Pan-genomes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … individual genome highlighting the fact that the genetic information in a single reference genome is insufficient. … took place a million years apart: the individual with a maternal  B. distachyon parent (D plastotype) some 1.4 million …
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Data Ecosystem
… annotation and analysis. The JGI and KBase seek to enable users to seamlessly access and analyze data on scales …
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Estimating DNA coverage and abundance in metagenomes using a gamma approximation
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A Complex Confection Decoded: Sugarcane Reference Genome
… cultivar R570 has been  published in  Nature by an international consortium. With the genetic code of sugarcane, … sugarcane  genome , the JGI provides foundational genetic information that crop breeders can use to improve sugarcane … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Jeremy Schmutz
Nature Genetics 46: 707-713. Paterson, AH et al. 2012. Repeated polyploidization of Gossypium genomes and the … Nature 492: 423-427. Bennetzen, JL & Schmutz, J et al. 2012. Reference genome sequence of the model plant Setaria. Nature Biotechnology 30: 555-561. The International Brachypodium Initiative. Genome sequencing and …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, including researchers … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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How Maize Makes An Antibiotic Cocktail
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  Community Science Program . And …
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Decoding Yellowstone’s Microbial Mats
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Boosting Small Molecule Production in Super “Soup”
… work complements efforts to further develop sustainable alternative approaches for manufacturing bioproducts and … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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