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An Integrated Dataset to Understand Ecosystem Interaction
… managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic … DE-AC05-00OR22725. The work ( https://doi.org/10.46936/10.25585/60000017 ) conducted by the U.S. Department of …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights … in April, which immediately precedes the JGI’s 14th Annual Genomics of Energy & Environment Meeting. Registration for … the genes for both pathways had never been observed in a single microbial population until now. Ca.   M. …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… generate high-quality genome assemblies and annotations for 35 species representing all major evolutionary lineages in … of Energy operated under Contract No. DE-AC02-05CH11231.This work was supported by US National Science Foundation … (NSF; grant PRFB IOS-1907220 to D.B.M.; grant MCB-1856143 to R.J.S.; grant DEB-1911459 to P.G.W.; grant MRI-1828479 …
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Team Science Reveals Important Protein in Poplar
… in   iron deficiency response, formation of secondary cell walls (biosynthesis), and integrating molecules that … was overexpressed, those plants had stunted growth, weaker cell walls, and were less resistant to disease compared to … CFN to determine where the protein was expressed in plant cells. JBEI also contributed to lignin and flavonoid …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … these samples by sorting the microbes into small pools of cells that were then sequenced separately. From these … more with JGI Microbial Program head Tanja Woyke and her Single Cells team member Frederik Schulz to screen the …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… summer sea ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, … several points in time to assess nutrient concentration and cell death. Immediately upon transfer, the experimental … significant stress with a higher proportion of dead cells recorded. Samples were taken again at two, six, 12 and …
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Picking Up Threads of Cotton Genomics
… All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in size, and are hybrids … crops. Additionally, cotton is almost entirely made up of cellulose and it is a fiber model to understand the molecular development of cellulose. Cotton Genomes on Phytozome The genomes of all …
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JGI User Executive Committee Expands
… genetics expertise and experience as a primarily fungal genomics user, he aims to help align JGI policies with … Her research focus is genetically engineering the plant cell wall to address dairy sustainability challenges. She’s …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… for a stressed typical plant, one that does what’s called C3 metabolism, named for a 3-carbon compound that plays an essential role. But other … yuccas is that there are closely related species that use C3 and CAM. ALISON: But plants don’t need to be restricted …
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Brachypodium distachyon genotypes vary in resistance to Rhizoctonia solani AG8
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Multi‐omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of … address of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, … that completely depends on the context and oftentimes a single molecule can be what I like to call …
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