Search

… an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples rather than single cells or …

… to high (596 genomes) complexity. The environmental datasets included metagenomic data from Crystal Geyser in Utah (work also done by the … Angelo Coast Range Reserve in California. Using DAS Tool on data from soil samples, researchers were able to reconstruct …

… that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … actually tested in the 2011 paper. In 2015, the study’s dataset became material for a hands-on undergraduate … three other universities. You can learn more about how JGI data supports higher education in this JGIota , a Genome …

… so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify … and to do research to get a better understanding of that data. ALISON: Awesome. So tell me why should I even care …

… samples in a single experiment — and integrated these data with single-cell gene expression maps. Together, the scale of data enabled by these approaches creates a vast resource … stricter filtering criteria provides a robust community dataset of improved quality; deep insights identify the most …

… with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to the wealth of public microbiome sequence data and enables the user to analyze these data with …

… Data from marine heatwave event may foreshadow climate … the water column along the Line P transect, a series of geographic coordinates which go from coastal to open ocean … in marine microbial communities. Using the JGI-generated data, Sachia Traving, a former postdoctoral fellow in the …

… to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as … is an updateable resource. To demonstrate that, we included datasets from two species, one of which is sweet sorghum Rio … seven more groups joined the project to contribute to the data for six new species. I must mention that some of the …