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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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Natural Prodcast Episode 15: Katherine Duncan
… because I really enjoyed the review that you wrote with Marnix on putting that stuff together. It’s been kind … once you’ve isolated them, you would have to do in situ studies in Antarctica. So I guess we’ll never know if we’ve … a subset of molecules that will fly on an analytical instrument and be detected. Dan Udwary: You’re making me so …
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MGM Workshop at Fisabio Summer School 2025
… research results in genomics, metagenomics and the human microbiome. The workshop will train participants in … training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Natalia Ivanova and …
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Microbial Genomics & Metagenomics (MGM) Workshop
… highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational … sequence data and enables the user to analyze these data with existing bioinformatic methods to bridge the gap from …
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Open Frameworks Training the Next Generation of Scientists
… for both student and faculty researchers. Aligning with this overarching goal, Myco-Ed is a partnership … biology analysis. KBase also supports  MICROnet (Microbiomes In Computational Research Opportunities … microbiome data. Undergraduate educators are partnering with the JGI and KBase to tap into their existing …
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Soil virus offers insight into maintaining microorganisms
… can have a significant impact on the microbial communities within soil. Using metagenomics, scientists can shed light … auxiliary metabolic genes (AMGs) that have nothing to do with a virus’ primary focus — replicating itself.  Chitin is … retrieved using the  JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) data portal. The IMG suite is a …
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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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Natural Prodcast Episode 14: Nigel Mouncey
… to a regular schedule. I’m going to kick things off today with my interview with the Director of the Joint Genome Institute and head of … I hope you’ll be listening. But this week, here’s my chat with my boss, JGI Director Nigel Mouncey. DAN: I’ll start by …
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Matt Blow
… Free-Living Growth and during Nitrogen-Fixing Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et …
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Supercharging SIP in the Fungal Hyphosphere
… a commonly-used process for studying microbial communities, with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) … prone, which limits the size and complexity of research studies that use SIP. Researchers at Lawrence Livermore …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… Viral Genomics Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range of … began to offer a window into viral existence. Along with highlighting the viruses in a given sample, … and grades their quality based on completeness. Along with expanding the viral diversity that IMG/VR features, …
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