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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … chromosomes of  Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene … candidate bioenergy feedstock crops such as sugarcane and sorghum. The  M. sinensis genome analysis explains the …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … the viruses to better understand their roles and potential impacts. The work is supported by NIH Common Fund grant …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … (saprobes), and many plant pathogens known to infect most major food crops and feedstocks for biomass and biofuel …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal lineages. … why, researchers analyzed 135 fungal genomes representing major fungal families, including those for which there were …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene … candidate bioenergy feedstock crops such as sugarcane and sorghum. The M. sinensis genome analysis explains the hybrid …
Learn more
Nigel Mouncey
… the fourth Director in its 27-year history. He has a wealth of managerial experience from almost 20 years in the … Click to learn more about the program's areas of focus, major initiatives and more.  … Ph.D. in Biochemistry, … World Bio Markets Bio-based Business Person of the Year Publications Committee Chair (2016- ), Society for …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority not harmful to humans could be even larger. Viruses …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model … polymorpha is also among one of the plants representing 35 major evolutionary plant lineages in the  Open Green Genomes …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new … Asia. Afterward, Lentinula groups evolved further, to four major groups: a lineage in Australasia and L …
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Expanding Virophage Diversity
DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … known virophage genomes share only four genes in common: major and minor capsid proteins (MCP and mCP, respectively), … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office …
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What Happens Underground Influences Global Nutrient Cycles
… projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … and the data will allow them to better understand the impacts of drought on plant metabolism and particularly, …
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Graduate Students Get Thesis Research Opportunity at the JGI
Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program … the opportunity to pursue part of their thesis research at one of the DOE national laboratories or national user … her 2018 internship, in which she explored anthropogenic impacts on wetland microbiome composition and metabolism, …
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