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Microbial Genomics & Metagenomics (MGM) Workshop
… designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for … bioinformatic methods to bridge the gap from sequence to biology. …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … flowering plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose … Berkeley; Gregor Mendel Institute of Molecular Plant Biology (Austria); Leibniz Institute of Plant Genetics and …
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New and Improved: Eucalyptus Reference is Now Accessible
… eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to … by the University of Connecticut (UConn) Computational Biology Core, who also provided computational biology support. … E. grandis TAG0014 HAP1 and HAP2 genomes (2025 assemblies) …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… director of Berkeley Lab’s Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s Microbial Systems group. The award ceremony was held January 19, 2021. …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of the genome , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our … additional genomic resources to address long-standing evolutionary ecological hypotheses about how C4 perennial …
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JGIota: The Algae Nicknamed ‘Chlamy’
… is also a faculty scientist in the Environmental Genomics & Systems Biology Division of the Berkeley Lab Biosciences Area.] …
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JGI User Executive Committee Expands
… feedback on pangenome tool development. Maurice is a fungal evolutionary ecologist with interests in understanding which … how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New Investigator … decomposition. She’s also participated in the 1000 Fungal Genomes Project and has an interest in cross-disciplinary …
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Eelgrass Proves to Be Much Younger Than We Thought
… Sequencing Program (CSP 502951, 2016, Population and evolutionary genomics of host–microbiome interactions in …
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JGI@25: The Little Alga That Could
… is a single-celled alga with a unique place in evolutionary history. Retaining ancestral features of both … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … impact. Her lab has sequenced four additional green algal genomes using Chlamy as a reference for functional …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… thus allowing them to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a model for evolutionary studies. Its place among early-diverging plant … 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. …
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A User-Centered Approach to Accessing JGI Data
… through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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