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… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … into multiple interconnected layers. The architecture of these algorithms, inspired by communication networks … Sevim is currently using HMM profiles of protein domains from the pfam database to test the efficacy of a …

… Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … Fellow at the Gordon and Betty Moore Foundation as part of the Marine Microbiology Initiative. She conducted her … at the Institute for Genome Sciences at the University of Maryland School of Medicine and her graduate work in …

… The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … and annotation of all publicly available genomes in three domains of life.  Using the IMG suite, JGI retrieved 142 of … This work was supported by the Department of Energy (DOE) Office of Biological and Environmental …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a … is a single-celled alga with a unique place in evolutionary history. Retaining ancestral features of both … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …

… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers searching for sequences of RNA … – as best we could, we tried to describe the protein domains every virus carries, and who is their likely host. …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a … technology described by the Nobel Foundation as having “a revolutionary impact on the life sciences.” Building upon … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …

… A special issue of Synthetic Biology celebrates research enabled by the JGI … and synthesis work. This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …

… During the summer of 2021, 13 interns from UC Merced spent eight weeks working … hone science presentation skills, and participate in professional development enrichment activities. For some … Merced internship program was founded in 2014 with the goal of inspiring students to embark on a career in genomics and …

… technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo PhD, Biotechnology, University of Tokyo … Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. …

… his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … a method that enables high-throughput characterization of transcription factor binding sites and which has been … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …