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Improving the Cacao Genome and Phytozome
… fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s … through the Cacao Genome Database project. The genome sequence was assembled by the plant team at the  HudsonAlpha … systemic orthology to enable use for both cacao functional biology and breeding.     …
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… along with its life cycle. For most bacteria, their DNA floats freely within the cytoplasm of their cells. This … bacterium itself was discovered by Olivier Gros, a marine biology professor at the Université des Antilles in … the bacterial cells on the molecular level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab …
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human Resources, Facilities, IT, Shipping and Receiving, Lab … Joint Genome Institute after serving as the Chief Operating Officer of the DOE Joint Bioenergy Institute and the …
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New and Improved: Eucalyptus Reference is Now Accessible
… a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with … using advanced technologies to reconstruct the complete sequences of individual chromosomes. The team describes the … Africa. The South African team collected the plant tissues. DNA and RNA sequencing were conducted by the JGI, along with …
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Soil virus offers insight into maintaining microorganisms
… The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome … AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis team synthesized and cloned both chitosanase …
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MGM Workshop at Fisabio Summer School
… Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and … and research results in genomics, metagenomics and the human microbiome. The workshop will train participants in …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … multiple times in order to obtain enough zoospores. DNA and RNA samples generated from the zoospores were then … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong …
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The genome of the polyextremophilic yeast, Naganishia friedmannii, reveals adaptations involved in stress response pathways, carbohydrate metabolism expansion, and a limited DNA repair repertoire
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … a whole genome duplication event, doubling all of its chromosomes.  Over time, the new and old chromosome copies … locations.  One group investigated changes in protein sequences, while others analyzed single point mutations …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists … those with pivotal applications in biotechnology, such as DNA editing enzymes.” Leveraging Protein Families in a New …
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