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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many … found to be colinear to comparable regions in sorghum. Based in part on these positive results, in 2017, JGI …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never heard of trifoliate orange. Otherwise known as  Poncirus … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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A Step Toward Controlling Soybean Rust
… causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science … , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed sequencing a …
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Introducing New Members of the JGI User Executive Committee
… serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons for wishing to serve on the UEC. For microbial ecologist … and engaging with new international collaborators and other scientific organizations. Fungal biologist Stajich from UC …
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Kjiersten Fagnan
… Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake … of data with MetaHipMer2. And the National Energy Research Scientific Computing (NERSC) has another supercomputer, … capable of running smaller assemblies — so we head there for a sense of what this supercomputing looks like. …
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Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution
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Force measurements of a magnetic micro actuator proposed for a microvalve array
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Increasing the Thermodynamic Driving Force of the Phosphofructokinase Reaction in Clostridium thermocellum
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… from this biomanufacturing collaboration is available for licensing. The Science In  Nature Communications , … hydroxyapatite, a high-value biomaterial with a wide range of industrial applications. The team was led by researchers … new microbial strains that can synthesize other bio-based materials. For information about licensing the …
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JGI Workshop at SIMB NP Meeting
… Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their … often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters … genomics capabilities that address these issues. Check the scientific program for relevant posters. …
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