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Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism
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Restoring wetlands on intensive agricultural lands modifies nitrogen cycling microbial communities and reduces N2O production potential
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The JGI Data Portal: Improving User Experience
… download experience from MycoCosm and PhycoCosm, with the intent of eventually transitioning to work on IMG and GOLD,” …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with excitement and determination as … into this internship, I was really excited to have the opportunity to vastly improve my bioinformatics skills and …
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A Model System for Perennial Grasses
… The U.S. Department of Energy (DOE) supports research programs for developing methods for converting plant biomass … crop, switchgrass. Through the JGI’s Community Science Program , JGI sequenced and assembled near-complete genomes … (DBL). Support was also provided by the Russian Government Program of Competitive Growth of Kazan Federal University. …
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A Community Resource for Secondary Metabolite Researchers
… with each other in a public forum. Second, SMC provides an opportunity for users to publicly engage with each other, …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … Institutes of Health’s (NIH)  Common Fund Human Virome Program .  Nikos Kyrpides , head of the JGI’s  Microbiome … Microbial Genomics and Microbiomes (IMG/M) system. The Program aims to better understand the viruses that coexist …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… continuously improved, but currently require input in the ~ 30 – 100ng range. Note that beyond quantity, input quality …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Yasuo Yoshikuni, head of the JGI’s DNA Synthesis Science program, underscored the value of taking a look at the AT … around 25, and eukaryotes having slightly larger numbers due to their expanded metabolisms. These ATs can operate in … role in metabolism.  This lack of conservation is likely due to the fact that AT enzymes have undergone …
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From Competition to Cooperation
… the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems project … Interfaces Scientific Focus Area in the Genomic Science Program, the Office of Biological and Environmental Research … (DOE) Office of Science. LGN is funded by the Momentum Program of the Hungarian Academy of Sciences (Grant No. …
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DOE JGI Metagenome Workflow
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Ronald de Vries
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