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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent … virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate … the previous year and continue working on their research project! The JGI-UC Merced internship program was founded in …
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs growth of poplar, a … fine-tune their engineering efforts of both plants and root microbiomes to grow energy crops more efficiently. Summary … 0002 01 to F. Martin), JGI Community sequencing program project (CSP570, DE-AC02-05CH11231), and National Science …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … presence of non-viral genes. Up to this point, there has been a lack of fast and accurate tools for researchers to … scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To …
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JGI announces 2024 Functional Genomics awardees
… genomics research from reseachers who translate genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and … in support of advancing the bioeconomy.  This year’s project goals range from improving crop productivity for …
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Introducing New Members of the JGI User Executive Committee
… – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here … efforts with diversity, equity and inclusion in mind. Microbiome ecologist Shade became Director of Research at … Genomics of Energy & Meeting. Any investigator who has been an active user of the JGI at any time in the past two …
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Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, … an estimated 40 to 80 percent of all the microbial cells on Earth. As microbial predators, viruses are able to determine … viral sequences, which would suggest the virus had been infecting the cell. The team assembled 130 genomes from …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a deeper … cousin. Ceratopteris richardii, or C-fern, specifically has been studied in plant research laboratories and plant … to Z.-H.C.). B.A.A. and D.W.S. acknowledge funding for this project from the Ambrose Monell Foundation. … Ceratopteris …
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JGI User Executive Committee Expands
Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … environments. He’s been involved in several plant genome projects through the Community Science Program. As a UEC … seagrasses, considered marine flowering plants, and their microbiomes. She is exploring the seagrass rhizosphere in …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. … the first time, the sex chromosomes of shrub willow have been sequenced with sufficient resolution to analyze their … (2017YFC0505203, 2016YFD0600101), and the National Key Project for Basic Research (2012CB114504). The work …
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A Powerful Technique to Study Microbes, Now Easier
Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process experiments that measure microbial …
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