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Metagenomic datasets could help map out microbial diversity hotspots … biodiversity. Using publicly available genome sequence data generated over the past three decades, their study … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

They are abundant representatives of deep subsurface ecosystems. A team of researchers described how the viruses … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst lab used to search for and …

… of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various formats. …

… mass spectrometry approaches and model laboratory ecosystems (EcoFABs). … Trent Northen is the Metabolomics … Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  … microbiome science through standardized fabricated ecosystems. Nature Methods (16), 567–571 (2019) doi: …

… how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New Investigator … also interested in developing or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and …

… metagenomes. He also works on automating intra-department data exchange and assists with large scale computations on …

… fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …

Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to … helpfulness and patience of my JGI PIs, having lots of data to play around with.” …

… of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes … fungal lifestyles of saprobes and pathogens based on the data provided. In this proof of concept test, the team … S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they also built a …

… as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley National … of enzymes. It’s useful to differentiate these enzyme tools into two groups: core metabolism and specialized … screwdrivers in a toolkit. This way, these important tools are always around, regardless of malfunction or …

… of Symposium Goals Metagenomic and single-cell sequence data have provided a means to access novel microbial … approaches to assign functional “read out” to sequence data. Moving from cataloging microbial diversity to …