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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a … Hu F, Regulski M, Blaby IK, Ware D, Blaby-Haas CE. (2024) Functional diversification within the heme-binding … Foflonker F and Blaby-Haas CE. (2021) Co-locality to co-functionality: Eukaryotic gene neighborhoods as a resource …
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A Community Resource for Secondary Metabolite Researchers
… for users to publicly engage with each other, share annotations and collaborate on solutions.  Compared with … Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231]. … SMC is the most comprehensive BGC database available …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute … in both the energy and health sectors. Mammalian Functional Genomics Lab VISTA Enhancers VISTA Cardiac Enhancer Browser ENCODE FaceBase … 2021-  NLM Board of Regents Working Group on “NIH …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … aim is to generate high-quality genome assemblies and annotations for 35 species representing all major …
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Jeremy Schmutz
… 19. Following the completion of the human genome project in 2003, he developed sequencing, assembly, and improvement … IL … Healey, A.L., Garsmeur, O., Lovell, J.T. et al.  2024.The complex polyploid genome architecture of sugarcane. … gene atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has set out to generate high-quality genome assemblies and annotations for 35 species representing all major … over seven million repetitive elements that account for 85.2% of the C-fern assembly. While they did identify a couple …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development … (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes … Crete, Greece … Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global metagenomics. Nature . …
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Triggering Morel Fruiting
… assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying leaves and woods into the … China, and a wild black morel strain M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome sequences and annotations are available on JGI’s fungal portal  MycoCosm . …
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Uncovering Novel Genomes from Earth’s Microbiomes
… in a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental … archaea by 44%, is now available and  described November 9, 2020 in  Nature Biotechnology . Known as the GEM (Genomes … our database of mappings between biochemical reactions and annotations. We look at what was annotated in the genome and …
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