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JGI@25: Fueling Investigation into Methane-Making Microbes
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … ch allenges. Methane emissions are a massive factor driving climate change. According to the Environmental … nine countries. Learn more about the Hungate1000 work led by AgResearch collaborators Bill Kelly and Sinead Leahy and …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The … relied on the E. grandis reference genome published in 2014 by a team led by University of Pretoria scientists with help from … proposal ID: 508017, Myburg, Wegrzyn, Borevitz) conducted by the US Department of Energy Joint Genome Institute ( …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest … field, growers can easily distinguish the cotton species by traits such as flower color, plant height, or fiber … and marketing company representing upland cotton funded by U.S. growers of upland cotton and importers of cotton and …
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SPRUCE-ing Up Science
… is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in … As a part of his internship, he was regularly tasked by his mentor to present his project work and navigate a … that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial communities mediate Sphagnum peatmoss …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… vigilant stewardship as JGI’s Operations Deputy has come to a close as this previously retired Naval Commander … delivering the (baked) goods – a retirement cake adorned by a JGI helix motif. Ray’s wife Deb, delivered a mask for … of a new JGI Director, and towards the strategic co-localization of JGI and KBase at the Integrative Genomics …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently … genome duplication occurs within a single species. By contrast, “allopolyploids” arise when different ancestral … oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is octoploid …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from … capabilities, large-scale data, and professional expertise to support the global research community in studies of … of products, making data easier to access and use, and by investing in the latest advanced genomic capabilities to …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and … nutrients from that decay, and deliver those nutrients to tree roots and soil. These fungi help shape a forest’s ecology. They store carbon and cycle key nutrients like nitrogen and …
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JGI Early Career Researchers Featured in mSystems Special Issue
… head Emiley Eloe-Fadrosh outline more targeted approaches to reconstruct individual microbes in an environmental … global ecological and environmental processes, especially by modifying host cell metabolism and altering cell fitness. … planet’s viral diversity has advanced drastically, aided by genome assembly from metagenomes. This is a critical step …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… of significant interest for their potential contributions to a sustainable bioeconomy, including, potentially, methane … little makers rely on to survive. Now, new research enabled by the U.S. Department of Energy (DOE) Joint Genome … .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two … ability to produce their own food and generate oxygen as a byproduct. The abundance of oxygen shaped the evolution of … was then used to predict the metabolic strategies applied by a common ancestor to all five lineages. In the lab of UC …
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Expanding Virophage Diversity
… genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic … Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, … Scientific Computing Center (NERSC) , which is supported by the Office of Science of the U.S. Department of Energy.   …
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