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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to create renewable energy sources and bolster agricultural resilience. … across JGI Plant Flagship speciesspecies, using deep-coverage RNA-seq analyzed in a consistant computational …
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2023 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … a dataset from months to days and halving the total reagent cost. While Biotin DAP-seq can be used by itself, it … factors have been repurposed during evolution to control new functions,” O’Malley said. “Combining the two approaches …
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Temporal dynamics in a red alga dominated geothermal feature in Yellowstone National Park
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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Kjiersten Fagnan
… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in …
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JGI on the 2020 Highly Cited Researchers List
… fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … , Susannah Tringe , and Tanja Woyke  were part of a “big data” mining effort reported in  Nature Biotechnology that … to help researchers assess and improve the quality of metagenome-assembled viral genomes. The paper appeared in  …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad Avenue Plume (NRAP) a … PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a local dry-cleaner. …
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Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis
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High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia
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Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments
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