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Jeremy Schmutz
Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford … to learn more about the program's areas of focus, major initiatives and more.  … BA in Biology, North Central … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific … Microbiology has developed, tested and deployed a pipeline to first target cells from communities of uncultivated … be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria … with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent … of significant interest for their potential contributions to a sustainable bioeconomy, including, potentially, methane …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough … Integrating Collaborations for User Science (FICUS) initiative, which allows researchers to integrate the …
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Forming Scientific Connections and Building Community
… pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … of Brachypodium distachyon root transporters in plant-microbiome interactions ” Cory-James Pugne-Andenoro : “The … at the recent JGI Annual Meeting. Through the DOE RENEW initiative, three of the interns – graduate students Peter …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an esteemed … are excited to continue our fruitful collaboration in the microbiome space that has resulted in many impactful papers …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s … for Minority Participation (CAMP) program, a statewide initiative funded by the National Science Foundation (NSF) …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the … have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied and Environmental …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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2025 NeLLi Symposium
Registration and Agenda Coming Soon!  Hosted by the DOE Joint Genome … Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of cellular complexity and microbial …
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