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Exometabolomic Analysis of Cross-Feeding Metabolites
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the … on every continent besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from …
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2024 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … synthesis and other omics technologies with computational analysis and prediction. Together, and in an integrated …
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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes … including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” …
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JGI on the 2021 Highly Cited Researchers List
Congratulations to the 2021 Highly Cited Researchers at the JGI! … influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade.” …
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The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem
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Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … a paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists …
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Igor Grigoriev
… at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of … to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … Relevant Links: Publication: Wint R et al. Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals …
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