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JGI@25: The Little Alga That Could
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. Chlamydomonas is a single-celled alga … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to … research community in studies of complex biological and environmental systems. We optimize our service to the community … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad … site. The chemical PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how these microbes have learned to adapt from marine to hypersaline conditions by studying …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges.   The Human Genome Project began in … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Extracting the Secrets of Secondary Metabolites
… for growth yet essential for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired … the BGCs that produce them cannot be activated in lab environments. CRAGE made some headway in overcoming this … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on how bacteria function and colonize diverse environments. The Science Cyclic di-GMP (Guanine Monophosphate) … of environments, including plants, soil, and the gut. To better understand the dynamics of this molecule, …
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JGI@25: Studying Sorghum’s Survival Skills
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. Sorghum stands out as a candidate … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science … helps plants that have it lose less water in a hot, dry environment. Figuring out how plants evolved to deal with hot … the plants.  ALISON:  That’s what might happen for a stressed typical plant, one that does what’s called C3 …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental and energy challenges. But not all scientists … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … struggle to identify and classify new species from environmental samples. Meanwhile, even well-studied genomes …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has … facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, … in understanding how, when and why microbes decide to produce which metabolites. …
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