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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … a given species).  “This is a great example of developing a large-scale genome infrastructure with a reasonably …
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has … with a community of switchgrass researchers to conduct a large-scale field experiment to uncover the genetic basis of …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied … to carbon cycling.  The Science Through a collaborative effort, researchers have identified a protein in soil viruses … AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … and managing public viral genomics resources such as analytical tools and data repositories to two projects … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and … relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … called crassulacean acid metabolism, or CAM — that’s C-A-M, for short — helps plants that have it lose less water in a …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. … approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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Forming Scientific Connections and Building Community
… pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : “It’s been great …
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Trent Northen
… Dr. Northen is currently a Senior Staff Scientist at Berkeley Lab. Since joining … Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental research, including through the …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
…   The JGI is excited to announce the 18 scientists selected for our 2025 Community Science Program Annual Call. These … of JGI’s User Programs. “Many of these projects are large in scale and involve multiple collaborators, bringing …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and professors alike The Science In  PLoS … and skill development while curating reusable microbiome data. Undergraduate educators are partnering with the JGI … MycoEd receives organizational and developmental support from KBase (The …
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