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Streamlining Regulon Identification in Bacteria
… bacterial RNA polymerases are made up of a core enzyme complex as well as a sigma factor. While all bacteria encode … and the experimental process for doing so is laborious and complex. RIViT-seq technology simplifies this identification process. Multiple factors mediate transcription, including …
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A Grass Model to Help Improve Giant Miscanthus
… of the genome sequence also provides insights into how the multiple chromosomes of  Miscanthus arose by ancient … simpler (and smaller) models,  Miscanthus has a large and complex genome whose evolutionary history and perennial … accessions and RAD-seq work was supported by EU FP7 KBBE.2011.3.1-02, grant number 289461 (GrassMargins) and the …
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A Grass Model to Help Improve Giant Miscanthus
… of the genome sequence also provides insights into how the multiple chromosomes of Miscanthus arose by ancient … simpler (and smaller) models, Miscanthus has a large and complex genome whose evolutionary history and perennial … accessions and RAD-seq work was supported by EU FP7 KBBE.2011.3.1-02, grant number 289461 (GrassMargins) and the …
Learn more
A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … repository of BGC sequences that come pre-annotated using multiple commonly used sequence analysis tools is a means of … comparable database, and has the capability to store and accurately display eukaryotic and viral BGC sequences. …
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JGI on the 2020 Highly Cited Researchers List
… over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … to identify a gene related to seed dispersal in wild populations for the first time. I-Min Chen ,  Natalia …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… visible to the naked eye, microscopy reveals unexpected complexity At first glance, the slightly murky waters in the … complete with leaves, debris, and even lighter threads in the mix. But in the Petri dish, the thin … that they were indeed giant single cells rather than multicellular filaments, as is common in other large sulfur …
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Nigel Mouncey
… has successfully built integrated and highly effective multi-disciplinary teams, and today, focuses on continuing … World Bio Markets Bio-based Business Person of the Year Publications Committee Chair (2016- ), Society for … Program … Education … About the JGI Director … Selected Publications … Awards and Honors …
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Finding the Fermenters
… compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. Department of Energy … (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an interactive browser that allows … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Dan Rokhsar
IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, … Genomics and Computational Biology … Education … Selected Publications … Awards and Honors …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… at Austin produced a high-quality reference sequence of the complex switchgrass genome. The reference genome built off … large polyploid genome, which means most genes are found as multiple copies across the chromosomes. In a follow-up study … (8X). They found that while the 8X variety was found in multiple states and environments, the 4X variety was more of …
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Tracing the Evolution of Shiitake Mushrooms
… genetic diversity between cultivated and wild shiitake populations. The Impact Lentinula mushrooms are white rot …
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The Case for Conservation
The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome … are available. The genome assemblies highlight the multiple advances in sequencing technologies applied to the … could lead to the discovery of genes that could be used for multiple biotechnological applications. These applications …
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