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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality … can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by … cultivar R570 has been generated and  reported in the journal  Nature . The work led by researchers at Australia’s …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … In  their study , which appeared in  The ISME Journal , they focused on how virus-infected microbes are …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … diversity has doubled, but in reality it could be three or four or five or tenfold more out there.” Digging Further into …
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JGI & KBase at PAG XXVII
The Plant and Animal Genome XXVII Conference (PAG) takes place … representatives from KBase and the JGI about collaborative science opportunities. Learn how to apply for a project with … and how you can use the KBase system to accelerate your plant genomics research. Click here to download a list …
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Jeremy Schmutz
Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford … Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant … 2023. JGI plant gene atlas: an updateable transcriptome resource to improve functional gene descriptions across the …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one … They play key roles in global carbon cycling, are sources of natural products, and have potential as biofuel …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
As set out in the JGI Five-Year Strategic Plan – “Beyond … A Vision for Integrative and  Collaborative Genome Science” – through early introduction to the resources and disciplines advanced by the JGI, we seek to …
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … genes associated with a given transcription factor is resource-intensive and unscalable. To test the efficacy of …
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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy feedstock … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate … evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications Webinar inviting … Investigator call for proposals.  Tips: Contact us with your questions (jgi-jira[email protected]) Carefully read …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
New 5-year strategic plan outlines how the JGI will advance the … bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for the global research … and stimulate a bioeconomy, where renewable, biological resources drive processes, products, and services.  Advancing …
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