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From Berkeley to Binghamton: Tracking Strawberry Evolution
… Jarrod Chapman, developed a method to correctly identify polyploid subgenomes without needing to know the genomes … genes from all possible candidate ancestors are available. Our method clearly identifies the four subgenomes based on non-genic sequences.”  In his words, …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… of plants and influence nutrient turnover over the course of a leaf’s life. Additionally, the phyllosphere … From our partners …
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Forming Scientific Connections and Building Community
… and also made new friends while working on their summer projects. Watch the short video here to see what they had to … below are the interns, their mentors, and their summer projects. Each intern also mentioned what they loved about … who were able to give me some guidance in my academic journey.” Mentors: Deze Kong & Yasuo Yoshikuni Project: “ …
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Genome sequence of the Trifolium rueppellianum - nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… be used to hypothesize environmental conditions.  The team plans to monitor and regularly update the Metagenome … under Contract No. DE-AC02-05CH11231. This research used resources of the National Energy Research Scientific Computing …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… are often very different than those bred for Texas. Identifying and breeding varieties that have high productivity … propagated from cuttings represent a diverse collection sourced from half of the United States. As  reported January … as a reference. Additionally, having the gardens as a resource helps breeders find genetic regions of interest.” The …
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Triggering Morel Fruiting
… is triggered when nutrients are acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes … mechanisms of morel with multi-omic approaches, our results revealed a striking capability of morel mycelium … processes unveiled by transcriptomics and proteomics. Our key findings contribute to an increasingly detailed …
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Mapping the Earth’s Hidden Fungal Kingdom
… past billion years, fungi have spread quietly throughout our planet. From the deepest ocean floors to Antarctic … like MycoCosm , the JGI’s online fungal genomics resource platform, reveals a stark imbalance. More recently … from diverse fungi, researchers struggle to identify and classify new species from environmental samples. …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… DSMZ overall, resulting not only in a valuable sequence resource to complement DSMZ’s vast strain resource, but also yielding and supporting many high-impact … of genomic DNA at DSMZ for GEBA-Actino and similar projects. … working to address some of the most pressing challenges of our time. For more information, please visit  …
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JGI on the 2020 Highly Cited Researchers List
… Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … Biotechnology.  The work also led researchers to identify a gene related to seed dispersal in wild populations for … of a JGI-led team that  applied machine learning to classify 101 representative genomes of Dothideomycetes, the …
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JGI Advisory Committee
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2025 NeLLi Symposium
… discussions centered on how to capture, define, quantify, and functionally characterize microbial diversity. The … to ensure accurate headcounts. * Optional Dinner and Tour of The Mob Museum on Nov. 5 This optional event includes dinner, distillery tasting, and tours of the Mob Museum and Fremont Street Experience. It …
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