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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the number of … of 328 “high quality” (based on completeness) diverse new virophage genomes containing all four core genes. These …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a local dry-cleaner. … cost-effective environmental cleanup strategies. Summary In New Mexico, the city of Española, the Santa Clara Pueblo and … ) conducted by the U.S. Department of Energy Joint Genome Institute (JGI) ( …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s three-quadrillion base pairs of … “When we proposed to do the Mendota time series, we knew that it was going to be more samples and more data per …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … application,” said Grigoriev, Wint’s other mentor and head of the JGI Fungal and Algal Program. Paying It Forward … continue expanding her understanding of mathematics and bioinformatics. “I love data, and when you love something, you …
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Massie S. Ballon
… and outreach efforts, the team aims to broaden awareness of and access to JGI public resources and the DOE mission, as well as help cultivate the next generation of genomic research users, partners, and collaborators.  Ms. … manager for over a decade. Her portfolio spans a wide range of topics beyond translating science, including crafting …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… As part of the ongoing partnership between DOE JGI and UC Merced to … Research Symposium , held February 6 at the University of California, Irvine, Cristhian and Bryan were among 5 UC … “It is a beautiful thing, that our young campus earned 25% of the research awards,” said Jesús Cisneros, director of …
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Katherine Louie
… production for community sequencing projects and heads R&D efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … her team work with other JGI scientists in development of new, advanced mass spectrometry research products such as …
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BBMerge – Accurate paired shotgun read merging via overlap
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Meraculous: De Novo Genome Assembly with Short Paired-End Reads
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MeCorS: Metagenome-enabled error correction of single cell sequencing reads
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Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a … gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … these 10 metagenome-assembled genomes (MAGs) representing new potential methanogenic, anaerobic methanotrophic and …
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