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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … DOE Office of Science User Facility, hosted three undergraduates and seven graduate students from UC Merced through … pipeline ” Anna Kucherova : “I got to learn about skills and tools that I’d never done before from my mentors. …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to … views” helped her further develop management and supporting skills for the students. Being able to do this was …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available … Impact This dataset gives researchers a new foundation for studying how fungi produce and manage energy at the cellular …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a … security. In complement to the Community Science Program, JGI researchers drive innovations that cross the boundaries …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … forest soils hold keys to tree health and carbon storage — skills that matter increasingly as the climate warms. … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Partners
… The JGI leverages its existing partnerships and develops others … advance the science and serve as impact multipliers . The JGI has a long-term partnership with the HudsonAlpha … and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy Research …
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Genome Insider
… Genome Insider podcast brings listeners into the science that the JGI makes possible. Each episode, host Menaka Wilhelm interviews researchers — JGI Users — and dives into their work on all kinds of …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles … Find more details on the instrumentation we use and our methodology for metabolite analyses.  …
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User Executive Committee
… The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley … with more than 15,000 secondary users who made use of our data. We completed 39,870 projects in FY24 We generated 871 …
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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and … of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all work performed …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about …
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