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Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii
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Nikos Kyrpides
… Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … BA in Biology, Aristotle University of Thessaloniki, Greece …
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Discovery and annotation of small proteins using genomics, proteomics, and computational approaches
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Discovery, Design, and Structural Characterization of Alkane-Producing Enzymes across the Ferritin-like Superfamily
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… Ancient  Chloroflexota s ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have … Other surprises in the research include a similar loss of cell walls and a complex pattern of evolution for genes … the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231. Work carried out …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy … of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … one DOE Office of Science National User Facilities in a single project. … FTICR-MS analyses were performed under the Facilities Integrating Collaborations for User Science (FICUS) initiative and …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … This work received funding by the Alfred P. Sloan foundation (grant number G-2017-9955), the Ministry of Culture …
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