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Picking Up Threads of Cotton Genomics
… , both faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new … is almost entirely made up of cellulose and it is a fiber model to understand the molecular development of cellulose. … Agricultural University (China), Texas A&M University System, U.S. Department of Agriculture-Agricultural Research …
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Viruses Reprogram Cells into Different Virocells
… it no longer looks or quacks like one, is it still a duck? For a team led by researchers from The Ohio State University … infections can affect the interactions within their ecosystems. Summary Microbes drive the energy and nutrient … diversity with an aim to improve predictive ecosystems models, University of Michigan’s Melissa Duhaime and The …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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2024 Progress Report
… seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National … also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department …
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Simon Roux
… link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, … Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France …
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Integrating Experimentation with Data
… and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated Laboratories: Integrating … AI/ML-enabled laboratory automation, data integration and modeling This three-day joint user meeting will feature … worldwide to explore complex biological and environmental systems using advanced experimental and informatic tools at …
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Exploring Polymorphisms Created by Transposable Elements
… transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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JGI & KBase at PAG XXVII
… from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. … collaborative science opportunities. Learn how to apply for a project with the JGI Community Science Program, and … and ongoing developments toward integrative biology. Researchers who are applying genomic sequence information to …
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Partners
… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further … Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a … to better understand lichen. The Impact Lichens are a model for inter-kingdom communication and cooperation. Their … carbon and nitrogen fixers in alpine and high latitude ecosystems, deciphering their internal molecular mechanisms can …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides … JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since identified  …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group … diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity.  … Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a combination of experimental …
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