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Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia …

… she was Director of Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the development of key components of Gene Logic’s flagship Genesis data management platforms for gene expression data, …

CRAGE-CRISPR combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, … is a technique researchers can use to integrate large genetic payloads directly into diverse microbes. Combining … with a powerful addition to their toolkit to study gene function. As a demonstration, the researchers used …

… up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … regulation as well as identification of target genes of transcription factors, particularly sigma factors …

MdS Hossain, J. T., Lovell, J. T.., et al. 2023. JGI plant gene atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. Nucleic Acids …

… viruses. Almost all known virophage genomes share only four genes in common: major and minor capsid proteins (MCP and … includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage … diverse new virophage genomes containing all four core genes. These virophages were found in diverse habitats …

University of Washington … Shen et al., Mitochondrial ATP generation is more proteome efficient than glycolysis., … Chemical Biology , 2024 Dubinkina et al., A transcriptomic atlas of acute stress response to low pH in multiple … characterization of a soil viral auxiliary metabolic gene product - a functional chitosanase., Nature …

… de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging molecular biology and reverse genetics to test those hypotheses. From 2011 – 2015, she … Blaby-Haas CE, Merchant SS. (2021) Widespread polycistronic gene expression in green algae. PNAS  118 (7) e2017714118 …

… to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well … the team unprecedented resolution to study the network of genes that contribute to the metabolisms that individual …

… interaction up close, using RNA sequencing to understand gene expression: one of the first cross-kingdom … can serve as a reservoir for carbon compounds that plants generate from carbon dioxide they take in. In this way, … with fungi, they used multiple approaches to look at gene expression in both plant cells and fungal cells. Using …

… interaction up close, using RNA sequencing to understand gene expression: one of the first cross-kingdom … can serve as a reservoir for carbon compounds that plants generate from carbon dioxide they take in. In this way, … with fungi, they used multiple approaches to look at gene expression in both plant cells and fungal cells. Using …