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JGI Pitches 2022 Visiting Faculty Program Collaborations
… (Berkeley Lab) hosted a pitch event promoting fully-supported summer research collaborations through the U.S. … for current faculty. Applying faculty members may invite up to two student participants from the faculty member’s …
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JGI Scientists Pen Genome Watch Articles
… genomics and metagenomics of the microbiology-focused groups at the Joint Genome Institute, it is fantastic that … through a collaborative network of researchers that we support through our role as a Department of Energy Office of … researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program lead Igor Grigoriev took readers on …
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The Case for Conservation
… question. In a recent Scientific Advances article , a team led by McDaniel and his former graduate student Sarah … be associated with a plant’s sex. One outcome could be superfemale plants that have increased fruit and seed yield. … Laboratory (Berkeley Lab), and at HudsonAlpha. As the team discussed in a JGI podcast episode about the work, the …
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Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata
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Effects of Polar Light Cycle on Microbial Food Web
… the polar regions to the deep ocean, cold environments occupy more space on Earth than any other ecosystem. Therefore, … decades. In these frigid systems, where organisms higher up in the food web like fish do not exist, nutrient cycling … water up top and anoxic water below. Cavicchioli and his team took samples from all three sections of the stratified …
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Building Sphagnum Genomic Resources
… researchers are developing a number of resources to build up Sphagnum as a plant model system focused on carbon … in nutrient-poor, acidic and waterlogged environments, occupying every continent except Antarctica. Researchers … the carbon away from methanogens. In The ISME Journal, a team led by researchers from the University of Konstanz and …
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Learning to Look
As described July 22, 2019, in  Nature Microbiology , a team led by scientists at the U.S. Department of Energy … a JGI research scientist in the  Environmental Genomics group . Training the Search Tool Inoviruses are stealth agents … known diversity of these viruses, genomic analyses led the team to propose that the Inoviridae should be classified as …
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Expanding Virophage Diversity
Kb. Additionally, the gene counts have similarly gone up from 13-25 to 12-39. “Overall,” the team concluded, “we provide a global analysis of the … Research Scientific Computing Center (NERSC) , which is supported by the Office of Science of the U.S. Department of …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… biology professor at the Université des Antilles in Guadeloupe, in 2009. Gros’ research focuses on marine mangrove … Program and is one of the article’s senior authors. The team was also compelled to study these large bacteria in … and the Gordon and Betty Moore Foundation. “This groundbreaking discovery highlights the importance of supporting …
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An Automated Tool for Assessing Virus Data Quality
… for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers have now developed … the host organism. As reported in Nature Biotechnology , a team from the U.S. Department of Energy (DOE) Joint Genome … latest release of IMG/VR . CheckV is freely available for download at: http://bitbucket.org/berkeleylab/CheckV . … The …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of … with the JGI’s growing efforts in establishing plant and fungal single-cell and spatial transcriptomic technologies, … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …
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Tanja Woyke Elected to American Academy of Microbiology
… eminent leaders in the field of microbiology and are relied upon for authoritative advice and insight on critical issues … genetic code. More recently reported in Nature , she led a team that reconstructed more than 2,000 genomes of large and … with Woyke, two JGI users were also elected to the AAM: fungal researcher Jason Stajich of the University of …
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