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Driving through stop signs: predicting stop codon reassignment improves functional annotation of bacteriophages
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Improving Synthetic Biology Communication: Recommended Practices for Visual Depiction and Digital Submission of Genetic Designs
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Dispatches From JGI Interns
… research projects with JGI mentors. In this episode, hear two interns from the 2021 cohort describe their deep dives …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … effort was to decode the complex Phytophthora ramorum genome. The JGI generated the organism’s DNA code in tandem … harvests. The subsequent comparative analysis of these two pathogens, led by the JGI and Virginia Polytechnic …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … they called the Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories … Sinead Leahy and the JGI’s Rekha Seshadri in this JGIota, a Genome Insider podcast minisode. To date it is the single …
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The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
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Population Level Analysis of Evolved Mutations Underlying Improvements in Plant Hemicellulose and Cellulose Fermentation by Clostridium phytofermentans
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the …
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … to build and position JGI as a leading integrative genome science user facility. In addition to serving as JGI … Nat Rev Microbiol. 18:313-314 Palaniappan K et al. 2020. IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic …
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Doubling Down on Known Protein Families
… of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the Novel … vast array of microbial dark matter. The study took roughly two years to complete, with only about 20,000 metagenomes …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … the world, finding over 125,000 partial and complete viral genomes. That study multiplied the number of known viral … access to these viral genomes. The new database was called IMG/VR. It featured samples from different ecosystems all …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), … values which are integral to what I do on a daily basis. Two of the most relevant are service and respect, and I live …
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