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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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2024 Progress Report
DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National … in studies of complex biological and environmental systems. We optimize our service to the community through …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… on cone snails, C. californicus in particular, as a model system for venom-microbe interactions. Cone snail venom has …
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Uncovering Novel Genomes from Earth’s Microbiomes
Berkeley National Laboratory (Berkeley Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the … microbes.” Teams of researchers worked on multiple analyses harnessing the genome repository, and the IMG/M team … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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JGI Scientists Pen Genome Watch Articles
… .  The latest article, published January 27, is about engineering plants and their microbiomes for more … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Marine Microbe Contains Multitudes
… the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, metatranscriptomes …
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Supercharging SIP in the Fungal Hyphosphere
… type of mycorrhizal fungi, live within a plant’s root system. They form mutually beneficial relationships with …
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Nikos Kyrpides
… al. 2020. A scoutRNA Is Required for Some Type V CRISPR-Cas Systems. Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant … The van Niel International Prize for Studies in Bacterial Systematics (2012-2014) American Academy of Microbiology … AgreenSkills programme, France; Meta-omics of microbial ecosystems, INRA, France; A Knowledge-Based Bioinformatics …
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Matt Blow
… and during Nitrogen-Fixing Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… that could be useful toward the DOE’s interest in harnessing the crop as a versatile candidate biomass … across the chromosomes. “In the past, we needed model systems to test genetic hypotheses in species with large and … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Cultivating Symbiotic Antarctic Microbes
… about how microbes have adapted to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the … Antarctic lakes and offers a genetically-tractable model system that could help researchers better understand the …
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