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… in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … unaware that [public but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which they inadvertently analyzed use-restricted data without contacting the lab that generated that data,” …

… published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early 2020, people … viruses that were present in the sample. From these data it is possible to answer a wide variety of important …

… it, viruses are most likely in your system and in your data, and they’re probably influencing the microbes there,” … In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding over 125,000 partial … its existing Integrated Microbial Genomes & Microbiomes database to include a dedicated section for viruses, so …

… (NEON) in collaboration with the National Microbiome Data Collaborative (NMDC) to produce open metagenomics data. Taking the JGI’s call for large-scale projects at … The accepted proposals will lead to large-scale AI-ready data to support the global research community. See below for …

… the User Support Analysis team to analyze plant microbiome data via programming languages like Python. The more … plants and extracting DNA. They also analyzed 16s amplicon data to determine microbiome composition. This gave them an … launch a jupyter notebook running R so they could do their data analyses.  When they weren’t in the lab, they were …

… Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Making Big Data Metagenomic Clustering Scalable …

… biology, single cell and systems biology, omics, and big data science, machine learning for experimental science, …

… to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as … is an updateable resource. To demonstrate that, we included datasets from two species, one of which is sweet sorghum Rio … seven more groups joined the project to contribute to the data for six new species. I must mention that some of the …