Search

… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, the  Genomes OnLine Database has matured from six projects on a spreadsheet into … GOLD Database … Datasets …

… and metabolic potential of the communities studied. The datasets are available on the JGI’s  Integrated Microbial …

… Ceratopteris richardii on Phytozome data portal … Datasets …

… of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes … fungal lifestyles of saprobes and pathogens based on the data provided. In this proof of concept test, the team … S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they also built a …

… We work with start-ups and mature companies, as long as the data are not proprietary. In addition, the JGI has a … instrumental support, how much help can users expect for data analysis of the different omics analysis? Are users expected to be trained to handle the huge amounts of data for each of the different analysis? A:  We go from …

… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational … advanced genomic capabilities, large-scale AI-ready data and professional expertise to support the global …

… in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … unaware that [public but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which they inadvertently analyzed use-restricted data without contacting the lab that generated that data,” …

… it, viruses are most likely in your system and in your data, and they’re probably influencing the microbes there,” … In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding over 125,000 partial … its existing Integrated Microbial Genomes & Microbiomes database to include a dedicated section for viruses, so …

… published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early 2020, people … viruses that were present in the sample. From these data it is possible to answer a wide variety of important …

… J (Senior Editor 2016-2021), Peer J (2015-2019), Scientific Data (2017-2019). Reviewer for major journals and funding …