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Modulation of sensory perception by hydrogen peroxide enables Caenorhabditis elegans to find a niche that provides both food and protection from hydrogen peroxide
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Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Maureen Coleman and Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, … biomass processing. This year’s portfolio also includes a project led by the National Ecological Observatory Network … metagenomics data. Taking the JGI’s call for large-scale projects at their word, the research consortium aims to …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from … relative of the oak. These fungi are part of the genus Lentinula, which have evolved to decompose hardwoods on every … award 0000238431 to D.H., the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Science and Innovation …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The first step in the deadly dance between a virus and microbial cell is an … (DP150100244) and the Australian Antarctic Science program (project 4031). The work in the Hallam Lab was performed …
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora … proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining the activity, … the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided by the …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that … they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … in five years, have come out of the JGI-supported project. “The JGI DNA Synthesis Science Program has been instrumental in establishing larger-scale research projects in our group. It’s enabled us to accelerate gene, …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and … researchers have been able to study both sides of this interaction up close, using RNA sequencing to understand gene … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was preceded by … one JGI mentor. Together, they work through a specific project that aligns with each intern’s interests or … in some cases daily, check-ins with their mentors to ensure projects progressed despite the challenges of remote work. …
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