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… Congratulations to Susannah Tringe , one of eight scientists and engineers who … as drivers of methane production, nutrient cycling, greenhouse gas emissions, and water recycling.” Tringe is the … Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s …

… led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, … information tracking, and enables efficient analysis and reporting of sequencing projects and their status. Mr. …

… resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel … decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high … the University of Konstanz and the University of Vienna  reported recovering draft metagenome-assembled genomes for …

… in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave interns the opportunity to be fully immersed in not …

… DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a … analysis.  MycoCosm provides data and tools via a graphical user interface, ensuring that no programming knowledge or …

… in mammals: a structure that helps correct deleterious mutations. The Impact Shrub willow and its close relative  Populus trichocarpa,  or the poplar tree, are potential biofuel … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can … were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  …

… the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory where he focused on functional genomics of phototrophs. Through this and …

… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … the development of novel computational tools to identify virus sequences, the design of new experimental approaches to link viruses to their host(s), collaboration with JGI users for …

… development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource for … once, producing a pangenome resource for sorghum , recently reported in Nature . “We wanted to build a resource that … how we think of things that we thought we knew everything about,” said Lovell.  In future work, a pangenome offers …

… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode … of which had not already been associated with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics …

… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome … now available to the global research community able to not just analyze but also create DNA sequences mimicking an array … sequences based on the principles it learns from the data about genetic structure — carrying with it the potential …