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Igor Grigoriev
… training at UC Berkeley and work in the pharmaceutical industry. He holds joint appointments as Fungal and Algal … geomics and PhycoCosm portal. Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous genomics workshops. … Algal Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its … and a part of the oil-producing Mucoromycotina group, about which little is known. The Cornell team cultivated and … all Mucoromycotina, that appear to be involved in identifying pheromones that are critical for this fungal …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… developed to help inform scientists and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of … fragments from the ecosystems. Selecting a protein identified from their studied system results in seeing their …
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JGI announces 2025 Functional Genomics awardees
… from left: [Above] Hao Chen, Matthew Cope-Arguello, Theophilus Olufemi Isimikalu, Todd H. Oakley, BJ Philmus and Aaron M. Roshotte; [Below] Paul Scesa, Kathleen Scott, Tiffany Taylor, Setsuko Wakao and Benjamin Woolston. ] Each …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… now available to the global research community able to not just analyze but also create DNA sequences mimicking an array … and other publicly available data, GenomeOcean employs artificial intelligence for cutting-edge genomic research — … sequences based on the principles it learns from the data about genetic structure — carrying with it the potential …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… (Berkeley Lab), the National Energy Research Scientific Computing Center (NERSC), the DOE Joint Genome … achievements in science, technology, and diversity/inclusion by the annual  HPCwire Readers’ and Editors’ Choice … JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire Editors Choice Award for Best …
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JGI on the 2021 Highly Cited Researchers List
… Nikos Kyrpides Dan Rokhsar Simon Roux Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of … (Watch SCGSR fellows Nick Reichart and Ian Rambo talk about their experiences at the JGI.) Igor Grigoriev hosted … developments that will enable researchers to move from identification of microbial novelty to assigning metabolic and …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy … data obtained from environmental samples — to identify over 27,000 microbial genes. These genes were … expanded into three other universities. You can learn more about how JGI data supports higher education in this JGIota …
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The More the Merrier: Making the Case for Plant Pan-genomes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are … two  B. hybridum types don’t interbreed. “Preliminary artificial crossing experiments between ancestral and recent  …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) … Program, and coordinates the development of the virus and plasmid workflows for the National Microbiome Data … symposium provides networking opportunities and fosters discussions on how to capture and characterize viral diversity, …
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Waiting to Respire
… popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then used to predict the metabolic strategies applied by a common … a longtime JGI collaborator, postdoctoral fellow Paula Matheus Carnevali was working with a group of …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a host, and not just any host will do. It must be a … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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