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Model Fern Reveals Insight into DNA Thievery in Ferns
… well as the evolution of seed plants, the fern’s distant cousin. Ceratopteris richardii, or C-fern, specifically has … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of plant-based biofuels and bioproducts. ( Learn more about OGG in  this episode of to the JGI podcast Genome …
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Nikos Kyrpides
… at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome … S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through global …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its … and a part of the oil-producing Mucoromycotina group, about which little is known. The Cornell team cultivated and … Fungal Genomes project. As reported in the November 29, 2017 issue of Nature Communications , the team found that …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… The Science In a recent Microbiome paper , scientists focused on the conifer needle microbiome. The phyllosphere, … pine, Douglas fir and Engelmann spruce–to learn more about conifer needle microbiomes. The survey showed what … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those … send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through …
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Understanding Wildfire Recovery, Starting in Soil
… forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way … from a wildfire that burned at the Colorado-Wyoming border, about a year after the fire. They sampled soil across a … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful …
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Help from Citrus’ Bitter, Hardier Cousin
… disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never heard of trifoliate orange. Otherwise known as  Poncirus trifoliata , it’s an evolutionary cousin of the  Citrus … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… a high-value biomaterial with a wide range of industrial applications. The team was led by researchers at two … produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing … can synthesize other bio-based materials. For information about licensing the patented osteoyeast for hydroxyapatite …
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Complete Genome Sequence of Francisella philomiragia ATCC 25017
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PhycoCosm Tutorial
… Learn more about PhycoCosm, the largest interactive collection of … analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community … CSP  New Investigator call for proposals.  Tips: Contact us with your questions (jgi[email protected]) … your proposal idea with JGI staff to clarify key points about JGI’s capabilities, technical feasibility, and …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… and what escapes to the atmosphere in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … than expected. The transcriptome data had suggested about a 50/50 split between fungal and bacterial enzymes. …
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