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How to Target a Microbial Needle within a Community Haystack
… the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … sample and then sorting these cells so that their DNA could be sequenced. Their protocol,  detailed in the …
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The INSIG2 rs7566605 genetic variant does not play a major role in obesity in a sample of 24,722 individuals from four cohorts
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Mutations in the predicted DNA polymerase subunit POLD3 result in more rapid flowering of Brachypodium distachyon
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DNA Methylation in Ensifer Species during Free-Living Growth and during Nitrogen-Fixing Symbiosis with Medicago spp.
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Diversity and Distribution of a Novel Genus of Hyperthermophilic Aquificae Viruses Encoding a Proof-Reading Family-A DNA Polymerase
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Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
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Axel Visel
… Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation … Axel Visel is the JGI's Deputy for Science Programs. Click to learn more about our seven science … direction, leadership, and oversight for all JGI scientific programs. The Deputy of Science is also responsible for …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… ramorum genome. The JGI generated the organism’s DNA code in tandem with a closely-related plant pathogen … engagement activities under the umbrella of the SOD Blitz Project. In hopes of controlling the spread of the disease, … lab in Mulford Hall. There, they conducted DNA analyses of samples collected on recent SOD Blitz expeditions. The team …
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Rex Malmstrom
… Applications group to operate a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His … also carries out custom preparative work for difficult user projects, including those that require fluorescence … analysis strategy for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … their expertise in developing and managing public viral genomics resources such as analytical tools and data …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a … in Nature Microbiology , went a step further, using both DNA and messenger RNA (mRNA) sequencing to identify those … Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest National …
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Soil virus offers insight into maintaining microorganisms
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … impact on the microbial communities within soil. Using metagenomics, scientists can shed light on hidden components, … the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis team synthesized and cloned both chitosanase …
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