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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory … Lab), the National Energy Research Scientific Computing Center (NERSC), the DOE Joint Genome Institute (JGI), … that supports “an unprecedented assembly of environmental microbiomes.” JGI’s Chief Informatics Officer  Kjiersten …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility located at …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for licensing. The Science In  Nature Communications , researchers … The work conducted by the U.S. Department of Energy (DOE) Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from additional parents or …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The … , and relying on the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more … database that is part of the Integrated Microbial Genomes & Microbiomes (IMG/M) suite, as well as sequences from the … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science …
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Taking Stock of the Known and Unknown Microbial Space
… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of microbial … collection and on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life … University of Vienna (Austria) PhD Microbial Ecology and Bioinformatics, University of Vienna (Austria) … Krinos et al. 2024. Time-series metagenomics reveals changing …
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A Community Resource for Secondary Metabolite Researchers
… Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most living creatures for energy, growth and reproduction—most … portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. That portal …
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JGI on the 2020 Highly Cited Researchers List
… those recognized by Clarivate Analytics as “true pioneers in their fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by citations for field and year in the Web of … available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos Kyrpides and  Simon Roux …
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Graduate Students Get Thesis Research Opportunity at the JGI
… Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at … a remarkable opportunity to launch a pilot project and begin the work of understanding how engineered environments … and the interactions of plants with their associated microbiomes. Tringe was also Kaze’s mentor during her 2018 …
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