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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes … facilitate microbial solutions to challenging environmental problems, advancing their utility across the bioeconomy. … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … The course had a defined set of objectives, and started with an image of a spoonful of dirt with the question: Do … the Florida Everglades ecosystem. There are no roads or real human traffic through this remote part of the …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. … these teams provide analysis support and R&D for production and user science. He received his Ph.D. from the … in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal … California State University campuses for biotechnology education as part of a course-based undergraduate resource … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
… Michelle O’Malley and Tom Lankiewicz of UC Santa Barbara discuss the importance of studying … opens up a new avenue to explore for efficient biofuel production. …
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The Fungi That Survive In Antarctica
… researchers Laura Selbmann and Claudia Coleine are working with scientists from around the world – and the JGI – to understand them better. …
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Boosting Small Molecule Production in Super “Soup”
… strains. (Blake Rasor) Think of cells as tiny factories: within their walls they have both the machinery to make … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … at industrial scales. “Cell-free systems have been really powerful at finding ways to accelerate bio-design and …
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Gut Fungi: Unexpected Source of Novel Chemicals
… the energy to make complex compounds called natural products . Yet, combing through the genomes of four anaerobic … in their hunt for anaerobic fungi. By growing extracts without oxygen in ruminant fluid — which smells terrible … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Cracking the Secrets of the Diatom’s Shell
… of their silica shells. But what genes are responsible for such mesmerizing exteriors? Setsuko Wakao and Kris Niyogi, biologists at both UC Berkeley and Lawrence Berkeley National Laboratory, aim …
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Mike Sneddon
… and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled … large-scale genomics and lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific … clinical cancer diagnostics company, where he led the Production Informatics team in delivering validated …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for … annotation, and analysis of three human chromosomes. After successful completion of the Human Genome Project, Professor … over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the …
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Nikos Kyrpides
… Inc. in Chicago, IL. He did his postdoctoral studies with Carl Woese at the University of Illinois at … Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is … AP. et al. (2023) Identification of mobile genetic elements with geNomad. Nat Biotechnol . Epub. Neri U. et al. (2022) …
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