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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP allows researchers to go … organisms who all consume different compounds. Microbial species will vary in activity as well; at any given time, …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both …   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days … If you know Joshua Tree, that’s an example of a yucca species. And the cool thing about yuccas is that there are …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements … studies. The Science Researchers demonstrated the value of conducting large-scale single cell genomics by collecting … community was similar across sequencing approaches, that species specific sets of single cells harbored mobile …
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large … the JGI Plant Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria … Streptomyces is more than just a funny word. The 500 species described within the group are responsible for … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters of Antarctica, tiny ocean-dwellers called phytoplankton play … study, they’ve cracked open the genome of another polar species, the green alga Microglena sp. YARC, which also …
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JGI Accepts 17 Proposals for Community Science Program
… Interactions Within Ecosystems Latest portfolio of approved proposals highlight biodiversity and how ecosystems are adapting to stresses. A total of 17 proposals have been approved through the annual … within the eucalypts, a group of fast-growing tree species that are widely grown as feedstocks for …
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … by an international consortium. With the genetic code of sugarcane, researchers were able to map the location of genes that provide resistance to the brown rust disease …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … friends or foes. The Impact Microbial communities comprised of fungi and bacteria can thrive in plant roots. They play … a mycobiome culture collection consisting of fungal species from natural Arabidopsis populations around Europe. …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … surface where algae grow. Armed with a better understanding of the alga’s stress resistance and ability to adapt to … ice surface handles such fluctuations. P. psychrophila is a species of Pelagophyceae, a microalga shown to thrive in …
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Len Pennacchio
… Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this polar environment. This cycle suggests a reliance on … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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