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Tracing the Evolution of Shiitake Mushrooms
… besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from around the world. By … sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks the enzymes …
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Supercharging SIP in the Fungal Hyphosphere
… Because microorganisms live in complex communities, like within soils or the gut, they are difficult to study … fungi, the most widespread type of mycorrhizal fungi, live within a plant’s root system. They form mutually beneficial …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen interest in the bioenergy and … of this field and bring it to the attention of the wider genomics community. Jan. 13 workshop: BER Plant Genomic …
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Emiley Eloe-Fadrosh
… pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to identify and characterize genomic information from uncultivated microbes and viruses. …
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Supporting Global Research into Actinomycetes
… is more than just a funny word. The 500 species described within the group are responsible for roughly two-thirds of … agents and to promote plant growth. It is the largest genus within Actinobacteria and therefore a cornerstone of … and the focus of a  recent paper published in  Microbial Genomics .   “Studying actinomyces, especially Streptomyces …
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A More Intuitive Phytozome Interface
… (for viewing and modifying multiple sequence alignments). Variation view on individual gene pages The ability to … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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What Happens Underground Influences Global Nutrient Cycles
… that may be relevant to both algae and land plants.  Within the biogeochemistry group, one of the four proposals … by the Terrestrial Ecosystem Science (TES) program within the DOE Office of Biological and Environmental … omics and computational resources with JGI’s cutting-edge genomics, DNA synthesis and complementary capabilities. …
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JGI Launches Latest Strategic Plan
… has begun to the June dedication event of the Integrative Genomics Building—the new home of the JGI and KBase in the … 47-49). “Our hope is to circulate this document widely within the Biosciences Area and among our Berkeley Lab …
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Matt Blow
… as a research scientist on projects to develop functional genomic technologies and to understand genome function in … and Biological Chemistry, Nottingham University, UK PhD in Genomics, University of Cambridge, UK Postdoctoral training … function. Nature 557:503-509. Blow et al 2016. The Epigenomic Landscape of Prokaryotes. PLoS Genet 122:e1005854. …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the … cell sorting to sort cells into several small pools, followed by whole genome amplification and shotgun … this microbe. The work is an example of how function-driven genomics, which Woyke and her colleagues define as “any form …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… sequencing, the researchers identified different cell types within  M. truncatula root cells, and profiled their gene … technique allowed them to understand gene expression within circular capture areas roughly 55-microns in diameter … and fungal activity at different stages of this symbiosis. Within that activity, Serrano, Cole and their team found …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Korea as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley … way, this family is more like including a Swiss Army knife within a toolkit – a tool with some redundancy, that is both … analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified across different species, …
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