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Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the … So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put … assembly from Lake Mendota. In this episode: the software evolution that made metagenome assemblies like this possible. …
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JGI announces 2025 Functional Genomics awardees
… Kathleen Scott, Tiffany Taylor, Setsuko Wakao and Benjamin Woolston. ] Each year, the JGI accepts proposals for … genomics research from scientists who translate genomic information into biological function. Through our  CSP … and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions allows …
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JGI announces 2023 CSP Functional Genomics awardees
… research from potential users who need help translating genomic information into biological function. Through our CSP … and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six researchers …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three groups focused on HTP … et al ., gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for … Cell . 25: 11, 4305-4323. 2013 Blaby et. al., Experimental evolution of a facultative thermophile from a mesophilic …
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy … for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … our seven science program — their areas of focus, major initiatives and more.  …
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Comparative analysis of the transcriptomes of Populus trichocarpa and Arabidopsis thaliana suggests extensive evolution of gene expression regulation in angiosperms
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Gene duplication, horizontal gene transfer, and trait trade-offs drive evolution of postfire resource acquisition in pyrophilous fungi
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Eelgrass Proves to Be Much Younger Than We Thought
… The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading around … to providing a more detailed timeline of eelgrass’s evolution, the study also shows the younger meadows in the … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the …
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Genome Sequences of Actinobacteria from Extreme Environments in Colombia
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Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes
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