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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … that showcase our collaborations and capabilities to enable great science that will help solve energy and … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids … lose many genes after such events, returning their genomes to a diploid state while retaining multiple copies of some …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved … To gain this insight into the evolution of ATs, this team traced the evolution of these enzymes across 90 species. They queried the genomes of 15 species from each of six kingdoms: eubacteria, archaea, …
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Charting Progress toward Professional Goals
… at the JGI Berkeley Lab offers a variety of programs to help inspire and train the next generation of STEM … with an experienced researcher who serves as their mentor. By contributing to projects that will help them build skills and tools, they …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental and energy challenges. But not all … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … of DNA base pairs, most fungal genomes contain fewer than 50 million — small enough that thousands can be sequenced …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… For the last 15 years, Ray Turner has been one constant for the Joint … vigilant stewardship as JGI’s Operations Deputy has come to a close as this previously retired Naval Commander retires from Berkeley Lab. For the last 15 years, Ray Turner has been one constant for the Joint …
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Hiroshi Otani
… facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, … in understanding how, when and why microbes decide to produce which metabolites. … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … for community sequencing projects and heads R&D efforts to expand the metabolomics capabilities and product … mass spectrometry research products such as stable isotope probing (SIP) to assess metabolite turnover, DNA-SIP …
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Benjamin Cole
… studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was … Dr. Cole is focusing on how individual plant cells respond to their biotic environment using emerging single-cell … characterization technologies (scRNA-seq, Spatial Transcriptomics). …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome … include the development of novel computational tools to identify virus sequences, the design of new experimental … RNA virome reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus diversity and …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … JGI, a Senior Scientist at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial … the JGI Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he …
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