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The Fungi That Survive In Antarctica
… mighty. They survive everywhere from Antarctica to Joshua Tree National Park, despite extremely harsh conditions. And … organisms survive hotter, drier climates. So University of Tuscia researchers Laura Selbmann and Claudia Coleine are …
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Better Living Through Bioenergy
Biofuels and bioproducts are a way to kick our addiction to … Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy Bioenergy Research Centers.  …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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2024 Progress Report
… processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … Revio. They enable increased capacities and faster sequencing, and at the same time help us manage costs. We … 11% of the five-year milestones. … Highlights arising from scientific collaborations with our users over the last year …
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Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species
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DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. Chen … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements … value to the other commonly used culture-independent sequencing approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … catalyzed by microbial communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
Michelle O’Malley and Tom Lankiewicz of UC Santa Barbara discuss the importance of studying anaerobic fungi, as well as a recent discovery that turns scientific presumption on its head and opens up a new avenue …
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Zhong Wang
… and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … data analyses and software to enable “grand-scale” scientific projects. These solutions include large-scale … metagenome binning software … Education … Selected Publications … Software …
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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