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Trent Northen
… Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to … starvation modulate root exudation. Science Advances, 2024 10(1), Schadt, C., Martin, S., Carrell, A. et al. An … CL, et al. Anaerobic gut fungi are an untapped reservoir of natural products. Proceedings of the National Academy of …
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of … Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β-Linked GlcNAc … R&D100 Award finalist 2019 SIMB Young Investigator Award 2013 …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … Leadership Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … From our partners …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and … in flowering plant gene regulation." Nature Plants 11, no. 8 (2025): 1514-1527. Lax, Carlos, Stephen J. Mondo, …
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Matt Blow
… Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  Ensifer … Nitrogen-Fixing Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. 2021. Persistence and …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His research activity is focused … metabolism and development in actinomycetes. He is particularly interested in understanding how, when and why …
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The Expanding Universe of Methane Metabolisms in Archaea
… metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the Integrated … & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory … as the data are not proprietary. In addition, the JGI has a Partnerships Development Team which helps catalyze … Feel free to  reach out to any of them with questions. Q:  Apart from instrumental support, how much help can users …
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Tracking the Origins of Methane-Producing Microbes
… University, the Chan Zuckerberg Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … that were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics … analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … A, et al. Anaerobic gut fungi are an untapped reservoir of natural products. Proc Natl Acad Sci U S A. 2021;118. …
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New Research Sheds Light on Diversity in the Deep Sea
… found along mid-ocean ridges where tectonic plates pull apart. As those plates separate, seawater seeps through … function in such extreme conditions. They identified 511 new or recently discovered genera of bacteria and archaea. … by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and …
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Webinar: PhycoCosm Tutorial
… data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI … are being added. We do plan to publish the tree or their parts and data it is based on 3.  Q(uestion): Can you please … now – large scale CSP and FICUS with March 24 and March 17 deadlines. 25-30% of proposals are selected, pretty high …
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